PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_33956-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 429aa    MW: 45854.9 Da    PI: 4.4488
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_33956-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.7e-11279324555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR++i +++ +L++l+P++      K +K+++L + ++Y+k Lq
  TRIUR3_33956-P1 279 HSIAERLRREKISERMKNLQDLVPNS-----NKADKSSMLDEIIDYVKFLQ 324
                      99***********************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.25E-12272328No hitNo description
SuperFamilySSF474599.55E-17272334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.901274323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-16276333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-8279324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-13280329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080147Biological Processroot hair cell development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MDYSNGSFFP SWPDNSASEN YSFVDGSVES YAEEGSMPPA GYFRARSNQN LTFDEHEQNP  60
AMLANGCLPY NTQTDLLSGE ILSEDKPSNS LMELPQLQNN GSLQSNLIPS GTLQCTSTPG  120
TFDLQLDTPG LLELPHALSS SIESNGSEVS AFLADVHAVS SASTLCSTFQ NVPSYMEPDS  180
KEFLSGGISS FGTAEQSQLA GSGLKAEQQE QNVMCNIPLP FASGSQMAIS STIHNNKSEY  240
PVPISHSADA QNKANSANGN SASAKPRARA RRGQATDPHS IAERLRREKI SERMKNLQDL  300
VPNSNKADKS SMLDEIIDYV KFLQLQVKVL SMSRLGAPGA VLPLLAESQT EGHSNSPLSP  360
PTASQGLLDA AGPEDSLVFE QEVIKLMETS ITNAMQYLQN KGLCLMPIAL ASAISNQKGT  420
SAAAVPPER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ9793920.0DQ979392.1 Triticum aestivum cultivar PH85-16 PTF1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227911.10.0PREDICTED: uncharacterized protein LOC100841109
TrEMBLM7ZGF50.0M7ZGF5_TRIUA; Transcription factor bHLH82
STRINGMLOC_59503.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.18e-48LJRHL1-like 1